- Rutter, J.W., et al. (2024).
A bacteriocin expression platform for targeting pathogenic bacterial species
Nat Commun,
doi:10.1038/s41467-024-50591-8
- Chen, Y.C., Destouches, L., Cook, A., Fedorec, A.J.H. (2024).
Synthetic Microbial Ecology: Engineering Habitats for Modular Consortia
J Appl Microbiol,
doi:10.1093/jambio/lxae158
- Fedorec, A.J.H., et al. (2024).
Emergent digital bio-computation through spatial diffusion and engineered bacteria
Nat Commun,
doi:10.1038/s41467-024-49264-3
- Clare, C., et al. (2024).
Bacterial microcompartment utilisation in the human commensal Escherichia coli Nissle 1917
bioRxiv,
doi:10.1101/2024.05.13.593892
- Hestehave, S., et al. (2023).
Predicting hypersensitivity and comorbid depressive-like behavior in late stages of joint disease using early weight bearing deficit
bioRxiv,
doi:10.1101/2023.11.29.569246
- Venturelli, O.S., et al. (2023).
What is the key challenge in engineering microbiomes?
Cell Systems,
doi:10.1016/j.cels.2023.01.002
- Karkaria, B.D., Manhart, A., Fedorec, A.J.H., Barnes, C.P. (2022).
Chaos in synthetic microbial communities.
PLOS Comput Biol,
doi:10.1371/journal.pcbi.1010548
Download the data here
- Rutter, J.W., et al. (2021).
Engineered acetoacetate-inducible whole-cell biosensors based on the AtoSC two-component system.
Biotechnol Bioeng,
doi:10.1002/bit.27897
Download the data here
- Fedorec, A.J.H., Karkaria, B.D., Sulu, M., Barnes, C.P. (2021).
Single strain control of microbial consortia.
Nat Commun,
doi:10.1038/s41467-021-22240-x
Download the data here
- Karkaria, B.D., Fedorec, A.J.H., Barnes, C.P. (2021).
Automated design of synthetic microbial communities.
Nat Commun,
doi:10.1038/s41467-020-20756-2
Download the data here
Code available on GitHub
- Treloar, N., Wen, K.Y., Fedorec, A.J.H., Barnes, C.P. (2021).
SynBioBrain: building biological computers from bacterial populations.
The Project Repository Journal,
doi:10.54050/PRJ1117751
- Fedorec, A.J.H., Robinson, C.M., Wen, K.Y., Barnes, C.P. (2020).
FlopR: An Open Source Software Package for Calibration and Normalization of Plate Reader and FlowCytometry Data.
ACS Synth Biol,
doi:10.1021/acssynbio.0c00296
Download the data here
Code available on GitHub
- Gorochowski, T.E., et al. (2020).
Toward engineering biosystems with emergent collective functions.
Front Bioeng Biotechnol,
doi:10.3389/fbioe.2020.00705
- Treloar, N.J., Fedorec, A.J.H., Ingalls, B., Barnes, C.P. (2020).
Deep reinforcement learning for the control of microbial co-cultures in bioreactors.
PLoS Comput Biol,
doi:10.1371/journal.pcbi.1007783
Download the data here
Code available on GitHub
- Karkaria, B.D., Treloar, N.J., Barnes, C.P., Fedorec, A.J.H. (2020).
From microbial communities to distributed computing systems
Front Bioeng Biotechnol,
doi:10.3389/fbioe.2020.00834
- Fedorec, A.J.H., et al. (2019).
Two New Plasmid Post-segregational Killing Mechanisms for the Implementation of Synthetic Gene Networks in Escherichia coli.
iScience,
doi:10.1016/j.isci.2019.03.019
Download the data and code here
Plasmids available on addgene
- Barnes, C.P., Fedorec, A.J.H. (2018).
Five amazing ways redesigning biological cells could help us fight cancer.
The Conversation
- Ozdemir, T., Fedorec, A.J.H., Danino, T., Barnes, C.P. (2018).
Synthetic Biology and Engineered Live Biotherapeutics: Toward Increasing System Complexity.
Cell Systems,
doi:10.1016/j.cels.2018.06.008
- Fedorec, A.J.H., Bryson, J.J. (2017)
Modelling information acquisition and its impact on social structure.
Proceedings of AISB Annual Convention
- Fedorec, A.J.H. (2017).
A DIY blue-light transilluminator.
EUSynBioS
- Leon, M., Woods, M.L., Fedorec, A.J.H., Barnes, C.P. (2016)
A computational method for the investigation of multistable systems and its application to genetic switches.
BMC Syst Biol,
doi:10.1186/s12918-016-0375-z